ANY phenix.refine run, from GUI or from a command line, ALWAYS generates an anomalous difference map, if an input data file contains Fobs(+) and Fobs(-). Please look into output MTZ file with map coefficients for such map. 

Pavel.


On 11/22/09 5:43 PM, Nathaniel Echols wrote: 
On Nov 22, 2009, at 4:00 PM, Maia Cherney wrote:
  
I want to verify some sulfur atoms in my ligands. I would like to use 
sulfur anomalous dispersion. I know the protein structure. What is the 
best way to generate an anomalous difference map? Is there a 
"phenix.find_anomalous_scatterers_from_model" or similar command in phenix?
    


You can generate the anomalous difference map using either of the same commands in my last message - the only difference is that the map type is simply "anomalous".

--------------------
Nathaniel Echols
Lawrence Berkeley Lab
510-486-5136
[email protected]






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