The error says it doesn't like the TER cards. Remove them all and retry.

Cheers

Nigel

---

Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Thu, May 28, 2015 at 1:29 PM, jp d <yoyoq@yahoo.com> wrote:

Hi,

I am having trouble getting phenix to used segid's in reference model restraints when

my reference and target pdbs both don't use chain ID's.

phenix quits with this message:

*** Adding Reference Model Restraints ***
Sorry: chain ' ' in /home/path/removed/agnref2.pdb contains one or more errant TER cards.
Please remove and try again.

my definition file looks like this:

refinement {
   main {
     reference_model_restraints = True
   }
   reference_model {
     file = two.pdb
   }
}
 
refinement.reference_model.reference_group {
 reference = segid A16S
 selection = segid A16S
}

(above about 50 more times)

this was on versions 1.9-1692 , dev-2016 and dev-2056

any suggestions ?

thanks

jpd

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