phenix-installer-1.4-55-intel-linux-2.6-x86_64.tar

I downloaded the newest nightly build per Nathaniel Echols' instructions. I was trying to fix the following error:

A Python error was detected. This is almost certainly a bug; please send an email containing this message to phenixbb@phenix-online.org so we can fix it. Thanks!

IndexError : string index out of range
Traceback:
Traceback (most recent call last):
File "/usr/local/phenix-1.4-3/

phenix/wxGUI2/Refine.py", line 259, in OnExcept
raise event.data
IndexError: string index out of range

phenix.refine_gui and phenix.refine were working perfectly well and then all of the sudden between 2 saves, something went wrong. My first PDB (refine_001-coot-2.pdb) is normal, but then refine_001-coot-3.pdb and onward are missing ALL of the REMARK cards. It starts with the CRYST card followed by the coordinates.

Could this be a coot problem? Can I cut and paste the REMARKs from refine_001-coot-2.pdb into the top of refine_001-coot-5.pdb?

Thanks!

On Mon, May 4, 2009 at 12:06 PM, Ralf W. Grosse-Kunstleve <rwgk@cci.lbl.gov> wrote:

Possible quick fix: yum install lapack

However, we don't really want to depend on a system lapack. I'd like
to track down why we have that dependency. Could you send me the
file name of the tar file you downloaded?

Ralf
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