If you've removed all of the TER cards then that error shouldn't still be showing up. If it is, then that's a bug.

Do all of your chains have the same chain ID, but different segid's? That could be problem, though that should work.

Would you be willing to send me the input files (off list)? It will be easier to diagnose what is going on if I can have a look at exactly what is going on.

Jeff

On Tue, Mar 19, 2013 at 8:42 PM, jp d <yoyoq@yahoo.com> wrote:

hi,
i am trying to refine using a reference model
and keep getting this error

*** Adding Reference Model Restraints ***
Sorry: chain ' ' in start.pdb contains one or more errant TER cards.
Please remove and try again

i've tried various things including removing all the TER lines
my models (reference and working) has many chains identified by segid's
any suggestions ?

thanks
jpd

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