Re: [phenixbb] compiling phenix from source error

8 Dec 2014

      Hi Ian,

thanks for your suggestion, i installed the x11 headers and it passed the
problem. however, now it gets stuck on gtk+

the logfile claims that libxrender can not be found. strange since this
library is now installed on my system.
"checking for XRenderQueryExtension... no
configure: error: *** libXrender not found. Check 'config.log' for more
details."

config.log enclosed from dir .../gtk+-2.10.11/

any idea?
thanks

Installing gtk+...
  log file is
/pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/gtk+_install_log
  getting package gtk+-2.10.11.tar.gz...
    using /pgmax/phenix-installer-dev-1839/gui/gtk+-2.10.11.tar.gz
Traceback (most recent call last):
  File "./bin/install.py", line 815, in <module>
    run(sys.argv[1:])
  File "./bin/install.py", line 72, in __init__
    self.install_from_source()
  File "./bin/install.py", line 292, in install_from_source
    log=out)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 115, in __init__
    self.build_cctbx_dependencies()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 170, in build_cctbx_dependencies
    self.build_wxpython_dependencies()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 440, in build_wxpython_dependencies
    self.build_wxpython_dependencies_linux()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 541, in build_wxpython_dependencies_linux
    self.call("./configure %s" % " ".join(gtk_config_args), log=gtk_log)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 200, in call
    return call(args, log=log)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
line 53, in call
    raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
RuntimeError: Call to './configure
--prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"
--disable-cups --without-libjpeg' failed with exit code 1

2014-12-08 22:32 GMT+01:00 :
...
Xrender can fail for many reasons, but generally missing X11 libraries or
headers on your system. Can you send the log file:
/pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
Thanks,
Ian
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On Mon, Dec 8, 2014 at 4:30 PM, Maxime Cuypers 
wrote:
...
hi all,
am getting the following error installing phenix from source dev-1839.
(tried with source from 1.9-1692 with same error) am on latest kubuntu.
any idea on how to debug? -see below report...
PS: am compiling from source because i need a minor modification of the
neutron scattering table which requires compilation.
cheerios,
....
Installing Xrender...
  log file is
/pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
  getting package xrender-0.8.3.tar.gz...
    using /pgmax/phenix-installer-dev-1839/gui/xrender-0.8.3.tar.gz
Traceback (most recent call last):
  File "./bin/install.py", line 815, in <module>
    run(sys.argv[1:])
  File "./bin/install.py", line 72, in __init__
    self.install_from_source()
  File "./bin/install.py", line 292, in install_from_source
    log=out)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 115, in __init__
    self.build_cctbx_dependencies()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 170, in build_cctbx_dependencies
    self.build_wxpython_dependencies()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 440, in build_wxpython_dependencies
    self.build_wxpython_dependencies_linux()
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 507, in build_wxpython_dependencies_linux
    self.build_compiled_package_simple(pkg_name=pkg, pkg_name_label=name)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 385, in build_compiled_package_simple
    log=pkg_log)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 203, in configure_and_build
    self.call("./configure %s" % " ".join(list(config_args)), log=log)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 200, in call
    return call(args, log=log)
  File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
line 53, in call
    raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
rc))
RuntimeError: Call to './configure
--prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"'
failed with exit code 1
max@A7K:/pgmax/phenix-installer-dev-1839$ uname -a
Linux A7K 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 17:53:56 UTC 2014
x86_64 x86_64 x86_64 GNU/Linux
--
Dr. Maxime Cuypers
-- 
Dr. Maxime Cuypers