I am trying to build the amber interface to phenix, but encounter an error. Running OpenSUSE15. Anyone have any ideas?

phenix.build_amber_interface

Phenix modules found : /opt/phenix-1.13-2998/modules/phenix

$AMBERHOME set : /home/roger/bin/Amber/amber18

Linking AMBERHOME to Phenix modules

Not linking $AMBERHOME into Phenix modules directory because there is
already a link and it points to the same directory as $AMBERHOME.
   $AMBERHOME : /home/roger/bin/Amber/amber18
   Phenix link: /opt/phenix-1.13-2998/modules/amber

Building amber_adaptbx

~> libtbx.configure amber

Python: 2.7.14 "/opt/phenix-1.13-2998/base/bin/python2.7"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: False
Boost threads enabled: False
Enable CUDA: False
Use opt_resources if available: False
Use environment flags: False
Enable C++11: False
Python3 migration warning policy: None
command_version_suffix: 1.13-2998
Relocatable paths anchored at: /opt/phenix-1.13-2998/build
Top-down list of all modules involved:
prime              "/opt/phenix-1.13-2998/modules/cctbx_project/prime"
iota               "/opt/phenix-1.13-2998/modules/cctbx_project/iota"
xia2               "/opt/phenix-1.13-2998/modules/xia2"
xfel               "/opt/phenix-1.13-2998/modules/cctbx_project/xfel"
dials              "/opt/phenix-1.13-2998/modules/dials"
simtbx             "/opt/phenix-1.13-2998/modules/cctbx_project/simtbx"
cma_es             "/opt/phenix-1.13-2998/modules/cctbx_project/cma_es"
labelit            "/opt/phenix-1.13-2998/modules/labelit"
rstbx              "/opt/phenix-1.13-2998/modules/cctbx_project/rstbx"
spotfinder         "/opt/phenix-1.13-2998/modules/cctbx_project/spotfinder"
annlib+adaptbx     "/opt/phenix-1.13-2998/modules/annlib"
                    "/opt/phenix-1.13-2998/modules/annlib_adaptbx"
phenix             "/opt/phenix-1.13-2998/modules/phenix"
reel               "/opt/phenix-1.13-2998/modules/reel"
wxtbx              "/opt/phenix-1.13-2998/modules/cctbx_project/wxtbx"
phaser_regression "/opt/phenix-1.13-2998/modules/phaser_regression"
phaser             "/opt/phenix-1.13-2998/modules/phaser"
tntbx              "/opt/phenix-1.13-2998/modules/tntbx"
solve_resolve      "/opt/phenix-1.13-2998/modules/solve_resolve"
muscle             "/opt/phenix-1.13-2998/modules/muscle"
ksdssp             "/opt/phenix-1.13-2998/modules/ksdssp"
pulchra            "/opt/phenix-1.13-2998/modules/pulchra"
phenix_html        "/opt/phenix-1.13-2998/modules/phenix_html"
phenix_regression "/opt/phenix-1.13-2998/modules/phenix_regression"
elbow              "/opt/phenix-1.13-2998/modules/elbow"
Plex               "/opt/phenix-1.13-2998/modules/Plex"
PyQuante           "/opt/phenix-1.13-2998/modules/PyQuante"
crys3d             "/opt/phenix-1.13-2998/modules/cctbx_project/crys3d"
gltbx              "/opt/phenix-1.13-2998/modules/cctbx_project/gltbx"
amber+adaptbx      "/opt/phenix-1.13-2998/modules/amber"
                    "/opt/phenix-1.13-2998/modules/amber_adaptbx"
mmtbx              "/opt/phenix-1.13-2998/modules/cctbx_project/mmtbx"
suitename          "/opt/phenix-1.13-2998/modules/suitename"
king               "/opt/phenix-1.13-2998/modules/king"
probe              "/opt/phenix-1.13-2998/modules/probe"
reduce             "/opt/phenix-1.13-2998/modules/reduce"
iotbx              "/opt/phenix-1.13-2998/modules/cctbx_project/iotbx"
ccp4io+adaptbx     "/opt/phenix-1.13-2998/modules/ccp4io"
                    "/opt/phenix-1.13-2998/modules/ccp4io_adaptbx"
dxtbx              "/opt/phenix-1.13-2998/modules/cctbx_project/dxtbx"
cbflib+adaptbx     "/opt/phenix-1.13-2998/modules/cbflib"
                    "/opt/phenix-1.13-2998/modules/cctbx_project/cbflib_adaptbx"
smtbx              "/opt/phenix-1.13-2998/modules/cctbx_project/smtbx"
ucif               "/opt/phenix-1.13-2998/modules/cctbx_project/ucif"
cctbx              "/opt/phenix-1.13-2998/modules/cctbx_project/cctbx"
scitbx             "/opt/phenix-1.13-2998/modules/cctbx_project/scitbx"
fable              "/opt/phenix-1.13-2998/modules/cctbx_project/fable"
omptbx             "/opt/phenix-1.13-2998/modules/cctbx_project/omptbx"
boost+adaptbx      "/opt/phenix-1.13-2998/modules/boost"
                    "/opt/phenix-1.13-2998/modules/cctbx_project/boost_adaptbx"
tbxx               "/opt/phenix-1.13-2998/modules/cctbx_project/tbxx"
chiltbx            "/opt/phenix-1.13-2998/modules/cctbx_project/chiltbx"
libtbx             "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx"
Processing: "/opt/phenix-1.13-2998/build/dispatcher_include_amber.sh"
Processing: "/opt/phenix-1.13-2998/build/dispatcher_include_phenix.sh"
Creating files in build directory: "/opt/phenix-1.13-2998/build"
   dispatcher_include_template.sh
   dispatcher_head.sh
Traceback (most recent call last):
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/env_config.py", line 2462, in <module>
   warm_start(sys.argv)
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/env_config.py", line 2456, in warm_start
   env.refresh()
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/env_config.py", line 1615, in refresh
   self.write_lib_dispatcher_head()
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/env_config.py", line 1248, in write_lib_disp
atcher_head
   target_file=self.under_build(target_file, return_relocatable_path=True))
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/env_config.py", line 1146, in write_bin_sh_d
ispatcher
   target_file.chmod(0755)
File "/opt/phenix-1.13-2998/modules/cctbx_project/libtbx/path.py", line 279, in chmod
   return os.chmod(abs(self), *args, **kwds)
OSError: [Errno 1] Operation not permitted: '/opt/phenix-1.13-2998/build/dispatcher_head.sh'

Roger Shek

Stony Brook University

Graduate Student in Biochemistry and Structural Biology (PhD)

Stony Brook Integrative Structural Biology Organization

Cell: (808) 386-3879

Website: https://www.rogershek.com