By the way, will you please let me know from which step we have the b-factors in the PDB files? Do the b-factors change with the progression of phenix refinement?
 
Smith





At 2015-04-13 21:46:20, "Alejandro Virrueta" <alejandro.virrueta@yale.edu> wrote:
Hello,

I was wondering if someone could show me a way to set the occupancy of a specific set of atoms to 0 using phenix.pdbtools.

I noticed here that there is no option under modify => occupancies to do an 'atom_selection'. Any help would be appreciated.

Cheers,
Alex