On Sat, May 29, 2010 at 2:27 PM, Susan Tsutakawa <span dir="ltr">&lt;<a href="mailto:setsutakawa@lbl.gov">setsutakawa@lbl.gov</a>&gt;</span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Continuing the conversation on looking at Phenix maps in pymol, what is the best way to generate .xplor maps in Autobuild.  I would like to generate a figure in pymol with an omit map.   I wasn&#39;t able to find documentation explicitly stating how this can be done.<br>
</blockquote><div><br></div><div>Okay, starting tomorrow (or whenever the next installer is ready):</div><div><br></div><div>phenix.mtz2map resolve_composite_map.mtz</div><div><br></div><div>You can specify a PDB file if you want it to create the map around your molecule (or a selection thereof) instead of the unit cell.  It is tailored for RESOLVE and phenix.refine map coefficients, which have fairly well-defined column labels; others should work too, but it may be clumsier.</div>
<div><br></div><div>-Nat</div></div>