Thanks Ralf. I had to download the new cci_apps but I'm getting an install error. [chem171-152-dhcp:~] francisreyes% source cci_apps_install_script.csh Build tag: 2008_05_25_1144 Please enter the number of available CPUs [1]: 2 Number of available CPUs: 2 Installing Python-2.5.2_cci from sources Configuring Python Compiling Python. This may take a while. Installing Python Done installing Python. Python 2.5.2 Precompiling all .py files. This may take a minute or two. Traceback (most recent call last): File "/Users/francisreyes/cci_apps_sources/libtbx/libtbx/ command_line/py_compile_all.py", line 2, in <module> import cStringIO ImportError: No module named cStringIO Configuring cci_apps build directory Traceback (most recent call last): File "/Users/francisreyes/cci_apps_sources/libtbx/configure.py", line 20, in <module> run() File "/Users/francisreyes/cci_apps_sources/libtbx/configure.py", line 16, in run import libtbx.config File "/Users/francisreyes/cci_apps_sources/libtbx/libtbx/ config.py", line 3, in <module> from libtbx.option_parser import option_parser File "/Users/francisreyes/cci_apps_sources/libtbx/libtbx/ option_parser.py", line 1, in <module> from libtbx.utils import Sorry File "/Users/francisreyes/cci_apps_sources/libtbx/libtbx/utils.py", line 11, in <module> import md5 File "/Users/francisreyes/cci_apps_build/base/lib/python2.5/ md5.py", line 6, in <module> from hashlib import md5 File "/Users/francisreyes/cci_apps_build/base/lib/python2.5/ hashlib.py", line 135, in <module> sha224 = __get_builtin_constructor('sha224') File "/Users/francisreyes/cci_apps_build/base/lib/python2.5/ hashlib.py", line 63, in __get_builtin_constructor import _sha256 ImportError: No module named _sha256 setpaths.csh: No such file or directory. Is it necessary to rebuild Python when I already have 2.5.2 from fink? import cStringIO using the fink python works just fine. Thanks FR On Jun 18, 2008, at 9:42 PM, Ralf W. Grosse-Kunstleve wrote:
Hi Francis,
I was previously refining a structures used phased (mlhl) refinement at 3.4. My dataset has a resolution range up to 2.5. The I/sig is still good at 3.0A. I tried changing the resolution cut off in the refinement .def file refinement.xray_data.high_resolution to 3.0, but I now get the error: Sorry: R-free flags not compatible with F-obs array: missing flag for 1 F-obs selected for refinement.
How were the R-free flags generated? We don't have utilities to easily manipulate R-free flags. Assuming you have an mtz file, based on the iotbx/iotbx/examples/mtz_free_flipper.py example script it wouldn't be difficult to find that one pesky reflection and assign it 0 or 1, as you wish. If you send me your mtz file I'll help out.
Ralf _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
--------------------------------------------- Francis Reyes M.Sc. 215 UCB University of Colorado at Boulder gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D