On Mon, Jun 14, 2010 at 12:20 PM, Ben Eisenbraun <span dir="ltr">&lt;<a href="mailto:bene@hkl.hms.harvard.edu">bene@hkl.hms.harvard.edu</a>&gt;</span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
So first off I see that I somehow got an older version of Coot lodged in my<br>
~/.phenix/prefs.params file.  It was pointing to a linux Coot 0.6.1 32-bit<br>
installation.  I assume that will override the phenix.find_coot_command?<br></blockquote><div><br></div><div>Yes, there has to be some way to override automatic behavior.  (For instance, I&#39;m using this right now to prevent Phenix from using the Coot installed by Fink, because Fink has broken on my computer, yet again.)</div>
<div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">The Mac problems appear to have cleared up when I removed the hard-coded<br>
path to the linux version of Coot in my preferences file.<br></blockquote><div><br></div><div>Sorry, I hadn&#39;t thought about cross-platform issues when I set this up; not sure if there&#39;s a good way to deal with this.  I don&#39;t think there are too many people running Linux+Mac environments with shared home directories, but I&#39;ve been worried about 32- vs. 64-bit compatibility.</div>
<div><br></div><div>-Nat</div></div>