Re: [phenixbb] disulfides and .defs, maybe custom geom.

Hi Bryan, Which version of phenix is this? Do you specify the .pdb file again, along with the .def file? In older versions the .pdb file was read twice. Newer versions will handle this the way you want to. In any case, it is always best to run phenix.refine some.def No need to specify the .pdb and .mtz files again, irrespective of the phenix.refine version. Ralf