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Yes, I also saw this… a solution is to manually edit the PDB file output by phenix.read_set to get rid of HD22 of N-linked Asn residues - then phenix.refine works.
HTH,
Luca
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Luca Jovine, Ph.D.
Professor of Structural Biology & EMBO Young Investigator
Karolinska Institutet
Department of Biosciences and Nutrition & Center for Innovative Medicine
Halsovagen 7, SE-141 83 Huddinge, Sweden
Voice: +46.(0)8.524-81136 FAX: +46.(0)8.6081-501
E-mail: [email protected]mailto:[email protected]
W3: http://jovinelab.org
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On 27 Apr 2015, at 10:52, Tristan Croll