Re: [phenixbb] geometry weight and rmsd bonds - angles

Hi Lionel,

Indeed some bond length or angle restraint outliers are from the ligand when refining with phenix. However I don't think this is the problem, I give to refmac and phenix the same ligand dictionary (cif file from ProDRG with link definition added with JLigand).

refmac and phenix.refine handle links differently. Could you send me your pdb file, the .cif file, and your phenix.refine parameter file (to me directly, not the bb)? Ralf