Hi Raja <br><br>I had once this problem  in my case ZN was written instead of Zn and the refinement was stopping ...<br><br>mick<br><br><br><br><div class="gmail_quote">2009/5/26 Raja Dey <span dir="ltr">&lt;<a href="mailto:rdey@usc.edu">rdey@usc.edu</a>&gt;</span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Dear Friends,<br>
                     I have Zn atoms in my pdb file. So, I think I need to run elbow to create the cif  otherwise refinement stops.<br>
I did the following and got the error as follows:<br>
<br>
phenix.elbow generate_easy_r4.pdb --do-all<br>
<br>
<br>
 ------------------------------------------------------------------------------<br>
  electronic Ligand Builder &amp; Optimisation Workbench (eLBOW) 1.4 3<br>
    - Nigel W. Moriarty (NWMoriarty@LBL.Gov)<br>
 ------------------------------------------------------------------------------<br>
<br>
 Random number seed:  664322001<br>
 0:00 Parsing Parsing Parsing Parsing Parsing Parsing Parsing Parsing Parsing P<br>
<br>
        No molecule read<br>
<br>
        Use --all-residues to view residues if this is a PDB file<br>
<br>
Can anyone suggests at this point, what I should do?<br>
Thanking you in advance...<br>
<br>
Raja<br>
<br>
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</blockquote></div><br><br clear="all"><br>-- <br>------------------------------------------<br>Mickael Blaise PhD<br>Department of molecular biology<br>Centre for structural biology<br>Aarhus university<br>Gustav wieds vej 10<br>
8000 Aarhus-Denmark<br>