You need to use .profile not .bashrc on a Mac
As a test run the source command yourself directly and then try running phenix.refine etc
Hope that helps
Kip
On Jan 29, 2013, at 10:16 AM, Simon Kolstoe
yes!
On 29 Jan 2013, at 14:55, R.D. Oeffner wrote:
Hi Simon,
Just to be clear; did you actually exectute the alias command before attempting to run phenix.refine?
rob
On Jan 29 2013, Simon Kolstoe wrote:
Hi guys,
I'm just trying to install phenix on a students new macbook pro running OS10.8.2, and want to get phenix.refine working on the command line. I've put in:
alias setphenix="source /Applications/PHENIX-1.8.1-1168/Contents/phenix-1.8.1-1168/phenix_env.sh"
in the .bashrc which seems to execute OK (and already pointed the .bash_profile to .bashrc) however whenever I then type phenix.refine I get command not found. As this is the same setup that I have running on my own machine I am a bit confused as to what is happening!
Thanks!
Simon
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