Hi Pavel, Thanks, could simulated annealing also be applied only to a portion of the molecule? Esmael On Jan 13, 2010, at 6:22 PM, Pavel Afonine wrote:Hi Esmael, yes. Example: phenix.refine model.pdb data.mtz modify_start_model.sites.shake=0.5 modify_start_model.selection="sidechain" Pavel. On 1/13/10 4:06 PM, esmael wrote:Hi, In phenix.refine can the shake option be applied to only a portion of the molecule? (for example to side-chains only). Thanks, Esmael Haddadian _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb