Hi Philippe,
I'm sorry for the slow calculation...the problem is the number of boxes is
too high. If you download a nightly build like this one:
https://phenix-online.org/download/phenix/nightly/?version=1.21rc1-5130
then it should be a lot faster (still not quick, but in your case should be
20x faster).
All the best,
Tom T
On Fri, Oct 27, 2023 at 2:16 AM CUNIASSE Philippe
Dear all,
i try to calculate local resolution maps with phenix since a couple of days. It turns out that the calculation seems very slow and i suspect that there is a problem because i even cannot stop the calculation with the abort button in the gui. In my last run (still running), i use 2 half-maps and the program can read them correctly, start the calculation by returning that 42875 boxes are considered. I run it on my MacBook pro (M1 running OSX 13.4 with 32Gb RAM) on 4 cpu. The calculation actually runs on 4 CPUs. However, with this calculation (and also a smaller map with about 17000 boxes on 1CPU), the calculations run more than 24 hours without finishing. I wonder if there coud be a problem and if no, what could be the duration of such calculation.
Thanks in advance for your help.
Best regards.
Philippe Cuniasse.
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Philippe Cuniasse, PhD/HDR.
Institute for Integrative Biology of the Cell (I2BC)
UMR 9198 CNRS-CEA-Univ Paris Sud
Bat 144 CE-Saclay
91191 Gif-sur-Yvette Cedex, France
Tel: (33) 1 69 08 56 35
Fax: (33) 1 69 08 47 12
Email: [email protected]
Web: http://biodev.cea.fr/rasmot3d/
Web: https://www.i2bc.paris-saclay.fr
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