Hello,<br><br>      I have a following issue with running Phenix.cutout density either on command line or in GUI.<br><br>      I have multiple columns in the mtz.file and I want to choose map coefficients FOFCWT_d1-8,PHFOFCWT_d1-8 for the difference map to be cut around pdb selection. I run a command:<br>
<br>phenix.cut_out_density     model.pdb     my.mtz      cutout_fix_position=True      cutout_model_radius=10    cutout_type=model     \  map_coeff_labels=FOFCWT_d1-8,PHFOFCWT_d1-8 <br><br>Problem: The output cutout.mtz has FWT and PHWT (which I did not have at all in the input) and not my difference map coefficients, and obviously the map is not my difference map.<br>
<br>In GUI is the same problem, I choose columns I need but it outputs FWT and PHWT again.<br><br><br>Please, let me know what I am doing wrong.<br><br><br>Thank you very much!<br><br>Mikalai<br><br>     <br>