Nigel and Engin, The script shows the NAG-ANS linkage being enforced, thanks. Engin, thanks for pointing out the inversion of my BETA1-4 links, that fixed the problem. As Phenix struggled to enforce my backwards restraints, it was distorting everything. Now my glycans look great! Best, Damian On Mar 1, 2011, at 2:58 PM, Nigel Moriarty wrote:
Engin
I would like to see the restraints for MAN and BMA that are correct compared to the monomer lib. I'd be interested in making it available in PHENIX.
Damian
You can check if the ASN and NAG are connected using the alpha script
elbow.refine_geo_display model_refine.geo NAG ASN
Nigel
-- Nigel W. Moriarty Building 64R0246B, Physical Biosciences Division Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Phone : 510-486-5709 Email : [email protected] Fax : 510-486-5909 Web : CCI.LBL.gov _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb