I forgot to mention that there are also several worked-out examples for phenix.mr_rosetta:

1. If you go to: $PHENIX/phenix_examples/HNP3-mr-rosetta there is a demo example for a small structure.

2. If you go to: http://www.phenix-online.org/phenix_data/terwilliger/rosetta_2011/ you will find several real examples with scripts in the blind_tests/ directory.

All the best,

Tom T

On Jan 31, 2011, at 1:15 PM, Ben Eisenbraun wrote:

Hi,

I'm testing Rosetta 3.2+PHENIX 1.7-650, and in the phenix.mr_rosetta
output, I see:

Checking rosetta paths:
rosetta binary: /programs/l/rosetta/3.2/rosetta_source/bin/mr_protocols.default
database_dir: /programs/l/rosetta/3.2/rosetta_database
script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/public/electron_density
pilot_script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/pilot/frank/

In the script directory, the C++ files were not built along with the
regular Rosetta build. Do those need to be compiled for the target
platform?

Also, the pilot_script_dir is empty. Is there supposed to be something in
there?

Thanks.

-ben

--
| Ben Eisenbraun
| SBGrid Consortium | http://sbgrid.org |
| Harvard Medical School | http://hms.harvard.edu |
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Thomas C. Terwilliger
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Los Alamos National Laboratory
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