Hi Taimin,
Also, you need to accept the licensing terms for Phenix before you can
download it (http://www.phenix-online.org/phenix_request/index.cgi). You
have to use the email address from your academic institution.
You will then get a password which will allow you to download Phenix. We
have precompiled packages or you can download the source and compile Phenix
yourself.
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org
On Wed, Nov 16, 2016 at 12:39 PM, R. D. Oeffner
I don't think building Phenix with bootstrap is yet possible using only anonymous access to all the necessary repositories. Many repositories require authentication. However, it is possible to rebuild the Phenix C++ libraries in an existing Phenix installation.
Regards,
Rob
-- Robert Oeffner, Ph.D. Research Associate, The Read Group Department of Haematology, Cambridge Institute for Medical Research University of Cambridge Cambridge Biomedical Campus Wellcome Trust/MRC Building Hills Road Cambridge CB2 0XY
www.cimr.cam.ac.uk/investigators/read/index.html tel: +44(0)1223 763234 mobile: +44(0)7712 887162 -----Original Message----- From: Taimin Yang Sent: Wednesday, November 16, 2016 8:20 PM To: [email protected] Subject: [phenixbb] Why can't I use bootstrap.py in cctbx to compile phenix?
Dear Professor,
My name is Taimin Yang and I am a PhD student in Stockholm University. I try to compile my own phenix using bootstrap.py but here is the error information:
root@Linux-main:/usr/local/crystallography_software/phenix# python bootstrap.py --builder=phenix --with-python=/usr/local/anaconda2/bin/python hot update build Performing actions: hot update build Traceback (most recent call last): File "bootstrap.py", line 2034, in <module> run() File "bootstrap.py", line 2029, in run enable_shared=options.enable_shared, File "bootstrap.py", line 926, in __init__ map(self.add_module, self.get_codebases()) File "bootstrap.py", line 1051, in add_module action = MODULES.get_module(module)().get_url(auth=self.get_auth()) File "bootstrap.py", line 553, in get_url raise Exception('No anonymous access method defined for module: %s. Try with --%s'%(self.module, e.args[0])) Exception: No anonymous access method defined for module: chem_data. Try with --cciuser
What should I do to compile my own phenix? Thank you very much.
Best regards, Taimin
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