Hi Sam,

two ways:

- ask phenix.refine to output X-plor formatted map. For example, to run phenix.refine just to compute the map:

phenix.refine model.pdb data.mtz main.number_of_mac=1 strategy=none write_maps=true

- use "Create maps" option from main PHENIX GUI that will alow you to compute any map.

Pavel.

On 10/27/09 2:28 PM, Sam Stampfer wrote:

Hi,

This isn't exactly phenix-related but someone might know an easy solution. I'm trying to open an electron density map in pymol. It won't open .mtz files and the .xplor files I generated from ccp4i don't seem to work either. I need to have my density as a .xplor file in order for pymol to open it (I think). How would I generate a .xplor file from .mtz? Or, alternately, how can I set phenix to output a .xplor file? I've had it output to a cns file instead of .mtz but that didn't help me get it in .xplor format.

Thanks!
-Sam
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