Dear Leonid, thanks for sharing this and for your patience while waiting for the fix! All the best! Pavel On 5/10/21 06:36, Leonid Sazanov wrote:
Dear Pavel,
Many thanks for this fix!
Using local_grid_search now does not produce those rare outliers - illustrated in the attachment for the benefit of others.
"Before" is the earlier version refine run and "after" is using phenix/1.20-dev-4224.
Best wishes,
Leonid
On 27.04.21 01:46, Pavel Afonine wrote:
Dear Leonid,
this is fixed now, residues won't leave good density any more. Next nightly build (dev-4218):
http://phenix-online.org/download/nightly_builds.cgi?show_all=1
should have the fix.
Please note, this is not the official released version meaning that while it is automatically tested it is not tested as thoroughly as regular official releases. With this in mind, it is advisable to keep around whatever version you are using currently just in case while using the latest nightly!
Let us know should you discover any more problems!
Cheers, Pavel
On 4/26/21 13:53, Pavel Afonine wrote:
Dear Leonid,
thanks for sharing files and my apologies for slow replies.
I was able to reproduce the issue and I'm on it investigating right now. I agree, this looks bad!
More soon as progress happens.
All the best! Pavel