Hi Peter,
The RESOLVE database doesn't have RNA+protein in it, nor does it have
low-resolution histograms, but you can create a new entry very
easily. Here is how:
1. Find a PDB structure that has the characteristics that you want
"refine_1.pdb"
2. Calculate a map with this model at the resolution you are
interested in:
phenix.pdbtools --f-model high_resolution=5 refine_1.pdb
3. Generate histograms with phenix.resolve. Here is a script:
#!/bin/csh -f
phenix.resolve< Hello all, I try to solve the structure of RNA and RNA/protein complex at low
resolution (5A). Phases come from partial model MR solution.
I would really welcome advice about density modification in such
cases with RESOLVE..
Does the RESOLVE database of density distributions contain RNA/
protein examples ?
Can RESOLVE work at low resolution given that histograms profiles
are at resolutions from 1.2 A to 4 A ? Many thanks for you help, Peter. _______________________________________________
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http://www.phenix-online.org/mailman/listinfo/phenixbb Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: [email protected]
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
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TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss