Re: [phenixbb] Failed to carry out AutoSol_scale_and_analyze_mad: None of the solve versions worked

Dear Nat, thanks for the prompt reply.

Are you sure you have C-shell installed? Yes it is installed.

The second thing to check is SELinux support, although I thought this problem might have been fixed in 1.6.4. I'm not sure I know how to do this.

Is 'p9_se_w2.sca' reporting the same error message? Yes, I gave the simple command:

phenix.autosol seq_file=seq.dat sites=4 atom_type=Se data=p9_se_w2.sca space_group="I4" unit_cell="113.949 113.949 32.474 90.000 90.000 90.00" resolution=2.4 thoroughness=quick and quickly got: ******************************************************************************** Failed to carry out AutoSol_scale_and_analyze_mad: None of the solve versions worked ******************************************************************************** Thanks! Gino ****************************************************************************** Gino Cingolani, Ph.D. Associate Professor Thomas Jefferson University Dept. of Biochemistry & Molecular Biology 233 South 10th Street - Room 826 Philadelphia PA 19107 Office (215) 503 4573 Lab (215) 503 4595 Fax (215) 923 2117 E-mail: [email protected] ****************************************************************************** "Nati non foste per viver come bruti, ma per seguir virtute e canoscenza" ("You were not born to live like brutes, but to follow virtue and knowledge") Dante, The Divine Comedy (Inferno, XXVI, vv. 119-120) ---- Original message ----

Date: Tue, 17 Aug 2010 10:14:25 -0700 From: Nathaniel Echols Subject: Re: [phenixbb] Failed to carry out AutoSol_scale_and_analyze_mad: None of the solve versions worked To: PHENIX user mailing list

On Tue, Aug 17, 2010 at 9:54 AM, Gino Cingolani wrote:

Strangely, at home my latest version of Phenix finds absolutely nothing and quickly end with the following error message:

******************************************************************************** Failed to carry out AutoSol_scale_and_analyze_mad:

None of the solve versions worked ********************************************************************************

To test is the problem is in our data, I quickly re-run 3 old mad/sad datasets of structures previously solved in the lab using the old (good) Solve and/or older Phenix versions. Sadly, all SAD/MAD searches quickly end with the same error message.

Are you sure you have C-shell installed?  I don't think Ubuntu installs it by default, but the wizards still require it.  If it's missing, this would explain why the older versions fail too. The second thing to check is SELinux support, although I thought this problem might have been fixed in 1.6.4.  

I then tested the 'p9_se_w2.sca' that comes with Phenix.. and once again the same premature failure.

I thought this didn't even use SOLVE (it is SAD so it would use Phaser) - is it reporting the same error message? I will try to test it on an Ubuntu machine later this week. -Nat ________________ _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb