Re: [phenixbb] average temperature factor

Hi Ursula,

Is there an easy way to calculate average temperature factors in phenix or another program after ADP + TLS refinement in phenix?

yes. If you PDB file is after phenix.refine run, then the average ADP is reported in PDB file header as well as in refinement log file. For a PDB file you can calculate average ADP using this command: phenix.pdbtools model.pdb model_statistics=true It does not matter where PDB file come from as long as ATOM or/and ANISOU records contain the correct ADPs. Pavel