Jens

You have a choice. You can find (if it's there) an Chemical Component entry that has the phosphate as part of the 3-letter code or you can find the phosphate moiety as a separate residue. In Phenix 1.10, this will be automatically linked and the LINK record written to the PDB output. 

I can help if you desire.

Cheers

Nigel

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Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Mon, Sep 21, 2015 at 9:34 AM, jens j birktoft <birktoft@nyu.edu> wrote:
Hi everyone 
I need some suggestions for a CIF file for a 5'-phosphate moiety that is part of the nucleotide (CYT in this case) located at the start of a DNA strand (5' end) to be used in refinement in both PHENIX and COOT.  
All suggestions are appreciated. 
Cheers
Jens


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Jens J. Birktoft
Structural DNA Nanotechnology
New York University
e-mail: birktoft@nyu.edu; Phone: 212-749-5057
very slow-mail: 350 Central Park West, Suite 9F, New York, NY 10025
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