I just realized that you could do it even without using truncate_to_polyala: phenix.pdbtools model.pdb keep="backbone" or, equivalently: phenix.pdbtools model.pdb remove="sidechain" and it works for both: proteins and RNA/DNA. Pavel. On 5/13/09 12:43 PM, Francis E Reyes wrote:
Though the original question was for protein, is there a mutate to poly C for RNA as well? :)
It just came to mind right now.
FR
On May 13, 2009, at 1:42 PM, Pavel Afonine wrote:
Hi,
the next nightly build of PHENIX will have this option available from phenix.pdbtools.
Example:
phenix.pdbtools model.pdb truncate_to_polyala=true
As always, any feedback will be very appreciated.
Pavel.
On 5/7/09 7:01 AM, Francis E Reyes wrote:
Is there an option or a phenix.* utility to mutate a MR model to poly ALA before the MR is done?
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