I created a virtual machine and did a
brand new Scientific Linux 6.3 (64) installation. After updating
its packages, I installed
phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3 almost
without a glitch.*
Following Kay's email I did a clean install of
fcphenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc12 and it
also worked beautifully.*
Thank you a lot Nat, Engin and Kay.
Cheers,
Davi
* - There was the following error message:
running mkfontdir
Couldn't determine weight for Vera.pfa
Couldn't determine weight for VeraMono.pfa
rebuilding font cache
Fontconfig error: Cannot load default config file
fc-cache:
"/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/share/fonts":
skipping, no such directory
fc-cache: succeeded
On 27/01/2013 13:54, Engin Ozkan wrote:
I just installed yesterday the latest nightly build on our
Scientific Linux 6 (6.3, I believe) machine using the 64-bit FC3
installer. No problems.
Engin
Engin Özkan
Garcia Lab, Stanford
-------- Original message --------
From: Nathaniel Echols <[email protected]>
Date:
To: PHENIX user mailing list <[email protected]>
Subject: Re: [phenixbb] Unable to install phenix 1.8.1-1168 on
Scientific Linux 6.3 64 bits
On Fri, Jan 25, 2013 at 4:15 PM, Davi de Miranda Fonseca
<[email protected]> wrote:
> I installed Scientific Linux 6.3 64 bits, updated everything
and installed a
> couple of things that I think would be necessary. Then I
uncompressed
> phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3.tar to
/tmp and tried
> to install, however I got some errors. Hence, I installed a
couple more
> things and tried installing again.
The first thing to try when something like this happens is to
download
one of the other 64-bit installers. In most cases the fc3 build
is
preferred, but there are some newer distributions where an
installer
built on a more recent version of Fedora is preferable. I would
start
with fc8 and work your way up.
The second thing to try, if all of the binary installers fail, is
to
install from source.
> ***** And here are the last lines of
>
/tmp/phenix-installer-1.8.1-1168/build-binary/intel-linux-2.6-x86_64/scientifix/log/binary.log:
>...
>
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python:
> /lib64/libc.so.6: version `GLIBC_2.14' not found (required by
>
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python)
>
> By the way, Scientific linux 6.3 comes with glibc 2.12.
To be honest I simply don't understand library versioning issues -
the
Fedora 3 machine we build that installer on currently has glibc
2.3,
so I don't know where the GLIBC_2.14 is coming from. I think it
will
be significantly more work to figure out a workaround than trying
the
other installers, though. Unfortunately we do not actually have a
Scientific Linux system here - the closest I could find was CentOS
6.2, and that works okay.
-Nat
_______________________________________________
phenixbb mailing list
[email protected]
http://phenix-online.org/mailman/listinfo/phenixbb
_______________________________________________
phenixbb mailing list
[email protected]
http://phenix-online.org/mailman/listinfo/phenixbb