What I saw were problems with phenix.refine (well-did not try anything else yet). The job seems to start normally (no error messages), but when you check the log file, nothing is happening (it remains empty or stops at initial steps). If you abort, close Phenix and restart it, the exactly same job runs just fine. I’m starting Phenix GUI from ‘Applications’, not command line.
Petri
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Petri Kursula, PhD
project leader, adjunct professor
Department of Biochemistry & Biocenter Oulu, University of Oulu, Finland
Department of Chemistry, University of Hamburg/DESY, Germany
www.biochem.oulu.fi/kursulahttp://www.biochem.oulu.fi/kursula
www.desy.de/~petri/researchhttp://www.desy.de/~petri/research
[email protected]mailto:[email protected]
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On 25 Oct 2013, at 17:01, Nathaniel Echols mailto:[email protected]> wrote:
Only the GUI, as far as I know - although apparently there are problems with the version of Python we're currently distributing, but I don't think those will affect most people.
-Nat
On Fri, Oct 25, 2013 at 7:37 AM, Bosch, Juergen mailto:[email protected]> wrote:
is this warning only for the GUI or also the CLI ?
Thanks,
Jürgen
On Oct 25, 2013, at 10:22 AM, Nathaniel Echols wrote:
There is some kind of strange issue with wxPython on the new Mac OS ("Mavericks"), which for at least the 1.8.4 version prevents Phenix application windows (but not the main GUI) from opening. It is also printing out an extraordinary number of warning messages about fonts to the console. I'm hoping there is a simple solution (which seems likely, since 1.8.2 is mostly okay despite using the same version of wxPython), but until we figure out what is causing this, I recommend leaving your Macs unmolested if you want to use the Phenix GUI.
Updates to follow if-and-when I fix this.
thanks,
Nat
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Jürgen Bosch
Johns Hopkins University
Bloomberg School of Public Health
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Johns Hopkins Malaria Research Institute
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