Re: [phenixbb] warning: do not upgrade Mac OS yet!

But, no, that problem existed before the Mavericks update (with Snow Leopard and Mountain Lion). I had learned to live with it. Engin On 10/25/13 1:45 PM, Petri Kursula wrote:

What I saw were problems with phenix.refine (well-did not try anything else yet). The job seems to start normally (no error messages), but when you check the log file, nothing is happening (it remains empty or stops at initial steps). If you abort, close Phenix and restart it, the exactly same job runs just fine. I'm starting Phenix GUI from 'Applications', not command line.

Petri

--- Petri Kursula, PhD project leader, adjunct professor Department of Biochemistry & Biocenter Oulu, University of Oulu, Finland Department of Chemistry, University of Hamburg/DESY, Germany www.biochem.oulu.fi/kursula http://www.biochem.oulu.fi/kursula www.desy.de/~petri/research http://www.desy.de/%7Epetri/research [email protected] mailto:[email protected] ---

On 25 Oct 2013, at 17:01, Nathaniel Echols mailto:[email protected]> wrote:

...

Only the GUI, as far as I know - although apparently there are problems with the version of Python we're currently distributing, but I don't think those will affect most people.

-Nat

On Fri, Oct 25, 2013 at 7:37 AM, Bosch, Juergen mailto:[email protected]> wrote:

is this warning only for the GUI or also the CLI ? Thanks,

Jürgen

On Oct 25, 2013, at 10:22 AM, Nathaniel Echols wrote:

...

There is some kind of strange issue with wxPython on the new Mac OS ("Mavericks"), which for at least the 1.8.4 version prevents Phenix application windows (but not the main GUI) from opening. It is also printing out an extraordinary number of warning messages about fonts to the console. I'm hoping there is a simple solution (which seems likely, since 1.8.2 is mostly okay despite using the same version of wxPython), but until we figure out what is causing this, I recommend leaving your Macs unmolested if you want to use the Phenix GUI.

Updates to follow if-and-when I fix this.

thanks, Nat _______________________________________________ phenixbb mailing list [email protected] mailto:[email protected] http://phenix-online.org/mailman/listinfo/phenixbb

...................... Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742 tel:%2B1-410-614-4742 Lab: +1-410-614-4894 tel:%2B1-410-614-4894 Fax: +1-410-955-2926 tel:%2B1-410-955-2926 http://lupo.jhsph.edu http://lupo.jhsph.edu/

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