third Q?
i want to generate anomalous difference map using
phenix.map
if your input data file contains anomalous fobs+ and fobs- (or iobs+
and iobs-) then phenix.maps (as well as phenix.refine) will generate
anomalous difference map automatically. All you need to do is:
1) Run phenix.maps to create a parameter file;
2) Edit that parameter file: specify input data file and labels, PDB
file, etc;
3) Run it:
phenix.maps maps.params
Alternatively, you can use PHENIX GUI to do the same thing: it is
very easy and may be a better option for someone who is
uncomfortable with running things in the command line, editing
parameter files, etc.