Hi Kristof, if Nigel haven't contacted you off list yet, could you please send us inputs necessary to reproduce this problem (in this case I guess this is your PDB file)? Also, it would be helpful if you tell what you did (clicked) before the error occurred. Pavel On 9/3/12 5:26 AM, Kristof Van Hecke wrote:
Dear,
When I try to add H-atoms to a metal-coordination complex (not a protein, nor DNA) during refinement or via the ReadySet module, I get the following error: (I have a proper restraints .cif file and without the 'add H-atoms' option during refinement, things work fine,. )
---------------- AssertionError : Traceback: File "/Applications/PHENIX-1.8-1069/Contents/phenix-1.8-1069/cctbx_project/libtbx/thread_utils.py", line 233, in run return_value = self._target(self._args, self._kwargs, self._c)
File "/Applications/PHENIX-1.8-1069/Contents/phenix-1.8-1069/cctbx_project/libtbx/runtime_utils.py", line 80, in __call__ result = self.target()
File "/Applications/PHENIX-1.8-1069/Contents/phenix-1.8-1069/phenix/wxGUI2/SimpleApp.py", line 17, in __call__ return self.target(args=list(self.args))
File "/Applications/PHENIX-1.8-1069/Contents/phenix-1.8-1069/elbow/elbow/command_line/ready_set.py", line 1038, in run no_file_access=True,
File "/Applications/PHENIX-1.8-1069/Contents/phenix-1.8-1069/elbow/elbow/command_line/join_cif_files.py", line 151, in run assert 0 -----------------
I have the latest version of Phenix (1.8.1069) and run it on a Mac Book pro (Leopard 10.5.8).
Any suggestions please..?
Thank you very much
Kristof Van Hecke
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