Hi Luca,

Glad you were able to find the solution. In the future there will be more flexible handling of chain IDs and segIDs, but for now what you've done is the best fix.

Jeff


On Tue, Jan 8, 2013 at 8:07 AM, Luca Pellegrini <lp212@cam.ac.uk> wrote:
Ok, fixed -

Eugene Valkov suggested using phenix.pdbtools with flags:

set_seg_id_to_chain_id=True (Sets the segID field to the chain ID).

or

clear_seg_id=True (Erases the segID field.)

I tried the second flag on both working and reference models, and now phenix.den_refine is running.

Luca

On 8 Jan 2013, at 12:34, Luca Pellegrini wrote:

> Phenix.den_refine (1.8.1-1168) stops and complains that:
>
> "Sorry: Reference model contains SEGIDs that do not match the working model."
>
> I have four chains in both working and reference model, ordered in the same way (A to D). Chains A and C are the same molecule, and chains B and D are also the same. Can you please advice? Some of the chains in the reference model contain more residues, is this a problem?
>
> Thanks for your help.
>
> Luca
>
>
> Luca Pellegrini
> Department of Biochemistry
> University of Cambridge
> 80 Tennis Court Road
> Cambridge CB2 1GA - UK
>
> Email: lp212@cam.ac.uk
> Tel: 0044-1223-760469
> Fax: 0044-1223-766002
> Sanger building, room 3.59
>
>
>
>
>
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb@phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb

Luca Pellegrini
Department of Biochemistry
University of Cambridge
80 Tennis Court Road
Cambridge CB2 1GA - UK

Email: lp212@cam.ac.uk
Tel: 0044-1223-760469
Fax: 0044-1223-766002
Sanger building, room 3.59







_______________________________________________
phenixbb mailing list
phenixbb@phenix-online.org
http://phenix-online.org/mailman/listinfo/phenixbb