Hi,
I am new to Phenix. Sorry if my question is naive.
For a given mtz file, I want to pick templates from a local PDB database (its actually iTasser template library) and perform Molecular Replacement using MRage. I have already installed Blast, downloaded iTasser PDB library (
http://zhanglab.ccmb.med.umich.edu/library/PDB.tar.bz2) and extracted sequences from both the downloaded PDB template library set and target protein for which mtz is available.
How should I go about building pipeline to perform MR using templates from locally downloaded select PDB database?
Are there any more parameters available for parameter name: services under scop: search other than "local" and "ncbi"?
Thanks in advance,
Kaushik
--
People living deeply have no fear of death - Anais Nin
Caution: I am still the dumbest person I have ever known :-)