Hi Vennila, I think Nat answered your question. I'm wondering though why you need to compute a map in such an "exotic" resolution range? I mean, what are the motivations to compute this map using only a narrow shell of medium resolution reflections rather than the whole dataset? Thanks! Pavel. On 12/22/09 9:40 PM, Nathaniel Echols wrote:
On Dec 22, 2009, at 8:36 PM, vennila Natesan wrote:
How do we create anomalous map using high resolution reflections? For example, if we have 2.2A resolution data (i.e 20-2.2A), i want to know how to create the anomalous map for the same dataset but from 2.4-2.2A resolution range.
I don't think there is a single-step method for this right now. The easiest alternatives:
1) From the command-line, I think this will work: phenix.reflection_file_converter --resolution=2.2 --low-resolution=2.4 --mtz=subset.mtz data.mtz phenix.model_vs_data subset.mtz model.pdb --map-type=anomalous (which will produce map coefficients in MTZ format) If you run into problems, typing the command name alone will print out a list of options.
2) From the GUI: use the reflection file editor to output the resolution range you want, then the "Create maps" app to generate an anomalous map (in either MTZ or XPLOR format). I will add resolution limits to the latter program soon.
However, I think a map calculated for 2.4-2.2A is going to look extremely distorted.
-------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected]
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