Dear all,<div><br></div><div>I am writing a bash script for running phenix.phaser automatically on an ensemble of multiple pdbs. These pdbs have been superimposed by other tools before running phaser. </div><div><br></div>
<div>The following is what I wrote for the ensemble part in params.eff file:</div><div><br></div><div> ensemble {</div><div>   model_id = a1</div><div>   coordinates {</div><div>     pdb = model1.pdb</div><div>     pdb = model2.pdb</div>
<div>     pdb = model3.pdb</div><div>     pdb = model4.pdb</div><div>     rmsd = None</div><div>     identity = 0.9</div><div>   }</div><div><br></div><div>It runs well. When it finished, I want to confirm that it really run MR on all four models or on a ensemble of these models. However in .log file, I found at the refinement part it shown me:</div>
<div><br></div><div><div>----------</div><div>REFINEMENT</div><div>----------</div><div><br></div><div>   There is 1 solution to refine</div><div>   Refining solutions</div><div>   0% 100%</div><div>   |==| DONE</div><div>
<br></div><div><br></div><div>   Configuring ensembles</div><div>   ---------------------</div><div>   PDB file # 1: model1.pdb</div><div>      This pdb file contains 1 models</div><div>      The (input) RmsD of this model with respect to the real structure is 0.8</div>
</div><div><br></div><div>****************************</div><div>Does this mean that phenix.phaser only run MR with the first model? Does it due to the way I wrote in my params.eff file? What would be the correct way? </div>
<div><br></div><div>Many thanks!</div><div><br></div><div>best,</div><div>G</div><div><br></div>