Hello everyone,<div><br></div><div>I used default setting in phenix and made an iterative-build omit map (it took 3 days!!!). </div><div>Input: a pdb file (6 identical chains in AU); an mtz file</div><div>output:  a resolve_composite_map.mtz; an overall_best_edited.pdb</div>
<div><br></div><div>questions:</div><div><br></div><div>1) There is only one chain in overall_best_edited.pdb, the resolve_composite_map.mtz clearly indicates there are 6 chains in AU.</div><div><br></div><div>2) What&#39;s the next step for me after obtaining resolve_composite_map.mtz? </div>
<div>        a) use phenix.refine to do refinement? if this is the case, what files should I use? </div><div>        b) use phenix.assign_sequence to  assign sequence to resolve_composite_map.mtz?</div><div>        c) something else?</div>
<div><br></div><div>Thanks in advance.</div><div><br></div><div>Jason</div><div><br></div><div>U Pitt</div>