[phenixbb] Re: Issues with zero B-factor and ADP refinement

Thank you for your kind response. I was indeed using a sharpened map, so I’ll try the refinement again with the raw map. As for the ADP refinement issue, I had been struggling with it for quite some time, but it turns out the refinement runs just fine when I use the command line. I didn’t use any new parameters, so I’m not sure why it failed before. Also, when I run the output back into the GUI, it runs without any problems now. There must be some underlying reason related to the PDB file or parameters, but at the moment I have no idea what it might be. Thanks again for your support!