Re: [phenixbb] how to move one domain of a protein in respect to another?

Hi Tatyana, without knowing much details about how you want to move the domains I guess these tools may be handy: phenix.pdbtools model.pdb rotate="10 20 30" translate="3 5 7" and phenix.superpose_pdbs pdb_file_fixed.pdb pdb_file_moving.pdb and may be phenix.pdbtools model.pdb --geometry-regularization Pavel. On 2/9/11 11:57 AM, Tatyana Sysoeva wrote:

Dear all,

I am working with a protein which form homooligomeric assembly. Each subunit of the assembly consists of 2 subdomains. I would like to create chimeras with the subdomains moved with respect to each other, keeping the linkers.

I am wondering what would be the easiest way to do this?

Any suggestions are welcome!

Sincerely, Tanya