On 09:12 Fri 13 Nov , Ralf W. Grosse-Kunstleve wrote:
The --quiet option exists (phenix.refine --help). Reading from stdin is too tricky as a general feature ("my job hangs") and since phenix.refine cannot work without reading from files (pdb, mtz) and writes many files already, that one extra file doesn't really make a difference.
Don't let that stop you from scripting, though. I often create a file within a shell script for passing into a program, then just clean up afterwards. Same effect. -- Thanks, Donnie Donald S. Berkholz, Postdoctoral research fellow James R. Thompson lab, Physiology & Biomedical Engineering Grazia Isaya lab, Pediatric & Adolescent Medicine Mayo Clinic College of Medicine 200 First Street SW Rochester, MN 55905