Dear Nigel,
Sorry, I downloaded something different: Linux [ download
command-line installer for development builds and modifications
(contains "modules" directory) ]
I will try to use that archive(s) that you suggested to me.
Thank you!
Martin
On 16/10/2024 15:59, Nigel Moriarty
wrote:
Martin
The best person to help is traveling today but I can get
started. Did you download the correct installer from the
link shown below?
Cheers
Nigel
---
Nigel W.
Moriarty
Building 33R0349, Molecular Biophysics and
Integrated Bioimaging
Lawrence
Berkeley National Laboratory
Berkeley, CA
94720-8235
Email : [email protected]
Dear
colleagues,
I'm trying to install AQuaRef. However, I'm struggling with
running
`bash config/update_phenix.sh aimnet2` which is part of
`bash
build_into_phenix.sh aimnet2`. This script wants to install
the python
package torch-cluster. However, I'm getting the error:
/opt/phenix/phenix-dev-5480/conda_base/lib/python3.9/site-packages/torch/include/torch/csrc/python_headers.h:12:10:
fatal error: Python.h: No such file or directory
12 | #include <Python.h>
| ^~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
I'm getting the same error when I tried to install only this
package
using the command `qrefine.python -m pip install
torch-cluster`.
I have a laptop with Ubuntu 22.04. I have all the usual
development
packages installed (build-essential, linux-headers, gcc,
g++, ...).
According Python, I have libpython3-dev, libpython3.10-dev,
python3-dev,
python3.10-dev. I can see that qrefine.python has a version
of 3.9, so I
also installed libpython3.9-dev, python3.9-dev and
python3.9-distutils
from ppa:deadsnakes/ppa but it did not help. I am also
attaching a full
log from the torch-cluster installation. It seems that the
package torch
has been installed successfully in prior.
Do you have please an idea what is wrong and how to fix it?
Thank you.
Martin_______________________________________________
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