15 Mar
2007
15 Mar
'07
7:41 p.m.
Hi, yes, the waters in your file do not match the Monomer Library definition. If you simply replace O1 with O that will fix the problem. For example: GOOD record: ATOM 22792 O HOH X 1 37.309 34.504 -14.174 1.00 38.28 O BAD record: ATOM 22792 O1 HOH X 1 37.309 34.504 -14.174 1.00 38.28 O
I have tried running elbow on my pdb already with no luck. using your command I get the error message: elbow.builder: error: no such option: --do-all
That makes me thinking that you are using an old version of CCI Apps or PHENIX. Are you using the latest one? Is the command you run looks like: % elbow.builder x.pdb --do-all Nigel: do you have any comments? Pavel.