Re: [phenixbb] PHENIX installation errors with CentOS 6

Everyone, Thanks to Tim and Nat for their help. I was not able to resolve the initial installation issues, however I did find that the FC12 binary release did install and run on my CentOS 6 WS. I did not try the source installations. I thought that some one else might find this information useful: CentOS 6: kernel 2.6.32-431.29.2.el6.x86_64 phenix-installer-dev-1810-intel-linux-2.6-x86_64-fc12.tar Best regards, Mark On Wed, 2014-10-01 at 11:14 +0200, Tim Gruene wrote:

An unlikely explanation is still more likely than none ;-) and it provides a starting point.

Cheers, Tim

On 09/30/2014 08:32 PM, Nathaniel Echols wrote:

...

On Tue, Sep 30, 2014 at 7:14 PM, Tim Gruene wrote:

...

you have the warning

"Warning: /usr/local/phenix-dev-1807 already exists, will be overwritten"

I would remove the entire directory before installation. Old files with old time stamps might confuse the installation procedure.

Very unlikely.

...

for the older version: Do you have executable permission in /home? A cautious installer might mount /home without executable permission.

This is unlikely to result in a segfault.

Mark, did you try the CentOS 5 build, and are you using the latest CentOS 6 revision? The binary installer worked fine for me on one of our VMs running CentOS 6.5. I'm trying the source installer now.

-Nat

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

-- Yours sincerely, Mark A. White, Ph.D. Associate Professor of Biochemistry and Molecular Biology, Manager, Sealy Center for Structural Biology and Molecular Biophysics Macromolecular X-ray Laboratory, Basic Science Building, Room 6.630 University of Texas Medical Branch Galveston, TX 77555-0647 Tel. (409) 747-4747 Cell. (281) 734-3614 Fax. (409) 747-1404 mailto://[email protected] http://xray.utmb.edu "Nothing is so fatal to the progress of the human mind as to suppose that our views of science are ultimate; that there are no mysteries in nature; that our triumphs are complete, and that there are no new worlds to conquer." - Humphry Davy (1802)