On Thu, Apr 21, 2011 at 3:23 PM, Maia Cherney
These commands did not work for me (version 1.7-650). I need to report average b factors separately for the protein, water, several ligands and ions, all of them in one chain A.
Traceback (most recent call last): File "/raid/programs/linux/ccp4-6.1.0/ccp4-6.1.3/lib/cctbx/cctbx_sources/mmtbx/mmtbx/command_line/pdbtools.py", line 3, in<module> from mmtbx import pdbtools
Your PYTHONPATH environment variable has been modified to include CCP4's distribution of CCTBX, which uses a completely different build of Python (resulting in the cryptic error message). I don't know how exactly this happens, but I suspect your .bashrc or .cshrc invokes some CCP4 script that modifies PYTHONPATH. At any rate, this is bad, because it overrides the module search paths used by Phenix. -Nat