Hi Jose, I'm sorry for the trouble! It is hard to know what could be causing autobuild to hang with this one omit region. Can you possibly send me off-list ([email protected]) the log file for this one omit region? In the job where you ran just the one omit region (with something like "omit_box_start=3 omit_box_end=3") the AutoBuild_run_1_/AutoBuild_run_1_1.log file will be helpful. Also a listing of the directory TEMP0: ls -tlr AutoBuild_run_1_/TEMP0 will be helpful. Finally if you can send the last log files shown in that listing of TEMP0 those could be helpful as well. All the best, Tom T
Hello, I tried to run an iterative build composite omit for my protein - P1, 1350 residues/monomer, 4 molecules in the A.U.. After about 1.5 weeks running almost all was done except one omit region which was stuck. I had two processes running indefinitely (reduce and python) with no output. I tried to rerun that region alone but it gets stuck also with reduce producing no output. What should I do to get the complete map (I am going to merge all the other regions together, but would like to know why this particular one is problematic). Thanks!
Jose
José Trincão, PhD CQFB@FCT-UNL 2829-516 Caparica, Portugal
"It's very hard to make predictions... especially about the future" - Niels Bohr
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