On Tue, Nov 22, 2011 at 7:35 PM, Rajesh kumar
I am new to Phenix. I have a structure 2.74 A structure with R/freeR 22.7/27.9%. But the molprobity score is 50th percentile. If I fix the outliers they wouldn't go away and molprobity score remains same or get worst.
Which version of Phenix are you using, and what are your current RMS(bonds) and RMS(angles)? Do you have NCS, and have you optimized the weights?
I added my .pdb and .mtz and do SA-composit omit map. This is running from morning and I have feeling that I will get results after thanksgiving. Is this the correct way of doing a omit map for the purpose I mentioned?
Yes. If you have a system with multiple processor cores, or a queueing system, I'd recommend taking advantage of these when running AutoBuild - although the SA omit maps are very slow, the composite omit map procedure parallelizes very nicely. -Nat