![](https://secure.gravatar.com/avatar/7984547b53fca6ae837ba286f9c92e29.jpg?s=120&d=mm&r=g)
11 May
2010
11 May
'10
4 a.m.
Hi Maia, just a remark: probably the quickest and simplest option to see if your ligand is there is to do these two steps: 1) physically remove the ligand from PDB file; 2) compute Average Kick mFo-DFc Map using phenix.refine or phenix.maps. Pavel.
I am wondering what is the difference between an omit map that is produced by the refinement without a ligand and an omit map produced by autobuild.