As a P.S.: I would be interested to see how this looks like. So if you send me the data and model and all else necessary to reproduce this and explain how to reproduce this I would greatly appreciate it. Thanks, Pavel On 4/20/13 7:40 PM, Jinzhong Lin wrote:
Dear PHENIX users,
In phenix, in order to improve bulk solvent model when the model is not complete, you can add dummy atom and set "refinement.mask.ignore_zero_occupancy_atoms=False".
My question is that can I just put a model ( I know the approximate position for the model) there instead of dummy atoms and set all atoms in the model zero occupancy and keep the same setting.
Will I get the same result? I suspect that model will still be used to calculate the Fc even though the occupancy is zero, so the map will be severely model biased.
Lithlin _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb