But my case is that no homology model for the target
protein and it should be built directly from the em map. What
should I do in this case ?
Hi
Wei,
cutting out a box with model and map around it may be a
solution for your case. A tool for this is phenix.map_box or
its GUI equivalent.
Pavel
P.S.: phenix.real_space_refine does this internally so
'irrelevant' box size never affects runtime of refinement.
Dear all,
The cell parameter of
the EM map is always too large, which will make the
model building program running very slow.
But in factor, the
structure is a smal part of cell. So can I smaller the
cell parameter when I use phenix.map_to_structure_factors
to convert the EM map to mtz
file.
Thank a lot!
Wei
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